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IBM Flow Manager & LSF - Number flows at the same time. In fact we are now resting at a 1:6 ratio between #CPU and the number of job slots on each host in the grid. The IBM Platform LSF product family delivers powerful workload management for demanding, distributed, and mission-critical technical computing environments. It includes a complete set of workload management capabilities, all designed to work together to address high-performance computing needs. To support the IBM HPS architecture, LSF HPC must reserve resources based on job slots. During installation, lsfinstall configures the ReservationUsage section in lsb.resources to reserve HPS resources on a per-slot basis.
- Checking the position of my jobs within a queue in LSF
- bqueues
- View detailed job information
- Change job order within queues
- LSF User's Guide - Tracking Batch Jobs
- Managing Jobs
- Tracking Batch Jobs
- [PDF] Platform LSF Command Reference
- Change job order within queues
LSF collects information such as: Total CPU time consumed by all processes in the job. Total resident memory usage in KB of all currently running processes in If you need to include a hyphen (-) or other non-alphabetic characters within the string, enclose the text in single quotation marks, for example, bsub -R 'select[hname!='host06-x12']'. If the LSF_STRICT_RESREQ=Y parameter is specified in the lsf.conf file, the selection string must conform to the stricter resource requirement string syntax
Is there a way to check the position of my jobs within an LSF queue?
If I run:
bjobs -u all -q my_queue
I get a list of jobs from all users within my_queue, but is this list sorted by the position of my jobs within the queue?
3 Comments
I believe you're interested in pending jobs.
This will show all pending jobs in a queue.
bjobs -u all -p -q my_queue
This list is sorted by position in queue.
The position is based on job priority and submit time.
Keep in mind, what is displayed is not a perfect indication of when a job will run. LSF will start jobs as the correct resources are available. A job requiring a lot of resources may be first in the queue. But if the required resources are not available, LSF will start other jobs behind it that are within the available resources.
For example, if you use bsub -a “esub1 ($PATH, `ls`)” user_job, the first argument passed to esub1 would be the value of variable PATH , and the second Job slot limits. Job slot limits can correspond to the maximum number of jobs that can run at any point in time. For example, a queue cannot start jobs if it has no job slots available, and jobs cannot run on hosts that have no available job slots.
To check progress on individual job -
This command sort of creates an output stream where the job redirects it's output.
For each host used by the pool, define a maximum job slot limit, either in lsb.hosts (MXJ) or lsb.resources (HOSTS and SLOTS). Configure two pools. The following Platform Load Sharing Facility (or simply LSF) is a workload management platform, job scheduler, for distributed high performance computing. It can be used to execute batch jobs on networked Unix and Windows systems on many different architectures. LSF was based on the Utopia research project at the University of Toronto.
squeue -l [queue name]
lists the priorities for all users.Jobs of users with higher priorities are run first.
When you submit a job to LSF Batch, it may be held in the queue before it starts You can use this command to check if your job is behaving as you expected the element with index 5 in the job array with ID 212 to the first queuing position. Lsf Job Slots losing any of your winnings (as long as your balance has never reached €100 or below). The first thing I do is to go to Bloodsuckers (98% RTP) and I want to give myself about 5 chances of winning with my real money, meaning that in this case I will bet €20 per spin for 5 spins.
#BSUB -n 1 asks LSF for one CPU core. You can check on the status of your job since it was submitted. The bhist command displays a summary of the pending, suspended, and running time of jobs for the user who invoked the command.
This chapter describes how to use some of the basicfeatures of LSF. After following the examples in this chapter you shouldbe able to use LSF for most of the everyday tasks.
Configuration options shown in the following examples,such as host types and model names, host CPU factors (representing relativeprocessor speed), and resource names are examples only; your system likelyhas different values for these settings.
Getting Cluster Information
Cluster information includes the cluster master host,cluster name, cluster resource definitions, cluster administrator, etc.
Displaying the Cluster and Master Names
LSF provides tools for users to get information aboutthe system. The first command you want to use when you learn LSF is lsid.This command tells you the version of LSF, the name of your LSF cluster,and the current master host.
To find out who your cluster administrator is anda summary of your cluster, run the lsclusters command:
If you are using the LSF MultiCluster product, youwill see one line for each of the clusters that your local cluster is connectedto in the output of lsclusters.
Displaying Available Resources
The lsinfo command lists all the resourcesavailable in the cluster.
The lsinfo command displays three listsof information:
- Available resource names in the system
- Available host types
- Available host models
The resources listed by lsinfo include built-inresources maintained by the LIM and site specific resources configuredby the LSF administrator. For a complete description of how LSF managesresources, see 'Resources'.
The host types and host models are defined by theLSF administrator. Host types represent binary compatible hosts; all hostsof the same type can run the same executables. Host models give the relativeCPU performance of different processors. In this example, your LSF clustertreats an R10K processor as being twice as fast as an IBM 350processor1..
Getting Host Information
LSF keeps information about all hosts in the cluster.Some information is static and some is dynamic. Static information is eitherconfigured by the LSF administrator, or is a fixed property of the system.An example of static host information is the amount of RAM memory availableto users on a host.
Dynamic host information, or load indices, is determinedby the LSF system, and updated regularly. Dynamic information representsthe changing resources available on the host. Examples of dynamic hostinformation are the current CPU load and the currently available temporaryfile space.
Displaying Static Host Information
A load sharing cluster may consist of hosts of differingarchitecture and speed. The lshosts command displays configurationinformation about hosts. All these parameters are defined by the LSF administratorin the LSF configuration files, or determined by the LIM directly fromthe system.
In this example, the host type SUNSOL representsSun SPARC systems running Solaris, and ALPHA represents a DigitalAlpha server running Digital Unix.
See 'ListingHosts' for a complete description of the lshosts command.
Displaying Load Information
The lsload command prints out current loadinformation.
The first line lists the load index names, and eachfollowing line gives the load levels for one host. The r15s, r1mand r15m fields give the CPU load, averaged over different timeintervals. The ut field gives the percentage of time the CPU isin use. pg is the paging rate, ls is the number of loginsessions, it is the idle time (the time since the last interactiveuser activity), swp is the available swap space in megabytes,mem is the available RAM in megabytes, and tmp is theavailable temporary disk space in megabytes.
The status column gives the load statusof the host. A host is busy if any load index is beyond its configuredthreshold. When a load index is beyond its threshold, it is printed withan asterisk '*'. In the above example, hostA is busy becauseload indices r15s and pg are too high. The lshosts-l command shows the load thresholds.
Hosts with ok status are listed first. Theok hosts are sorted based on CPU and memory load, with the besthost listed first.
The lsload command reports more load indicesif the -l option is given.
The lsmon command provides an updating displayof load information. The xlsmon command is an X-windows graphicaldisplay of host status and load levels in your LSF cluster.
See the lsload(1), lsmon(1),and xlsmon(1) manual pages for more information. Alsosee 'Displaying the Load'.
Running Jobs
LSF supports transparent execution of jobs on allserver hosts in the cluster. You can run your program on the best availablehost and interact with it just as if it were running directly on your workstation.Keyboard signals such as CTRL-Z and CTRL-C workas expected.
Running Jobs on Remote Hosts
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There are different ways to run jobs on a remotehost. To run myjob on the best available host, enter:
LSF automatically selects the best host that is ofthe same type as the local host.
If you want to run myjob on a host withspecific resources, you must specify the resource requirements. For example,
runs myjob on a host that has resource 'cserver'(see 'Displaying Available Resources')and has at least 100 megabytes of virtual memory available.
If you want to run your job on a particular host,use the -m option:
When you run an interactive job on a remote host,you can do most of the job controls as if it were running locally. If yourshell supports job control, you can suspend and resume the job and bringthe job to background or foreground as if it were a local job. For a completedescription, see the lsrun(1) manual page.
You can also write one-line shell scripts or cshaliases to hide the remote execution. For example:
or
Load Sharing Commands With lstcsh
The lstcsh shell is a load-sharing versionof the tcsh command interpreter. It is compatible with cshand supports many useful extensions. csh and tcsh userscan use lstcsh to send jobs to other hosts in the cluster withoutneeding to learn any new commands. You can run lstcsh from thecommand line, or use the chsh command to set it as your loginshell. Refer to 'Using lstcsh'for a more detailed description.
Parallel Processing With lsmake
lsmake is a load-sharing, parallel versionof GNU make. It is compatible with makefiles for most versionsof make. lsmake uses the LSF load information to choosethe best group of hosts for your make job. Targets in the makefileare processed in parallel on the chosen hosts using the LSF remote executionfacilities. You do not need to modify your makefile to use lsmake.By default, lsmake chooses hosts that are all of the same type.
The following example uses the lsmake -Vand -j 3 options to run on three hosts and produce verbose output:
lsmake includes control over parallelismfor recursive makes, which are often used for source code trees that areorganized into subdirectories. Parallelism can also be controlled by theload on the NFS file server, so that parallel makes do not overload theserver and slow everyone else down. See 'Usinglsmake' for details.
Batch Processing
Listing Hosts
LSF Batch uses some (or all) of the hosts in anLSF cluster as batch server hosts. The host list is configured by the LSFadministrator. The bhosts command displays information about thesehosts.
STATUS gives the status of sbatchd.If a host is down or its sbatchd is not up, its STATUSis 'unavail'. The JL/U column shows the maximum numberof job slots a single user can use on each host at one time. MAXgives the maximum number of job slots that are configured for each host.The RUN, SSUSP, and USUSP columns display thenumber of job slots in use by jobs in RUN state, suspended bythe system, and suspended by the user, respectively. The field RSVshows job slots that are reserved by LSF Batch for some jobs. The NJOBSfield shows the sum of field RUN, SSUSP, USUSP,and RSV.
For a more detailed description of the bhostscommand see 'Batch Hosts'.
Submitting a Job
To submit a job to the LSF Batch system, use thebsub command.
For example, submit the job sleep 30. Thiscommand does nothing, and takes 30 seconds to do it. The LSF administratorconfigures one queue to be the default job queue; if you submita job without specifying a queue, the job goes to the default queue.
In the above example, 1234 is the job IDassigned by LSF Batch to this job, and normal is the name of thedefault job queue.
Your batch job remains pending until all conditionsfor its execution are met. Each batch queue has execution conditions thatapply to all jobs in the queue, and you can specify additional conditionswhen you submit the job.
The -m 'host1host2...' option specifies that the job must run on one of the specifiedhosts. By specifying a single host, you can force your job to wait untilthat host is available and then run on that host.
For a detailed description of the bsub commandsee 'Submitting Batch Jobs'.
Selecting a Job Queue
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Job queues represent different job schedulingand control policies. All jobs submitted to the same queue share the samescheduling and control policy. Each job queue can use a configured subsetof the server hosts in the LSF cluster; the default is to use all serverhosts.
System administrators can configure job queues tocontrol resource access by different users and types of application. Usersselect the job queue that best fits each job.
The bqueues command lists the availableLSF Batch queues:
A dash '-' in any entry means that the column doesnot apply to the row. In this example some queues have no per-queue, per-useror per-processor job limits configured, so the MAX, JL/Uand JL/P entries are '-'.
You can submit jobs to a queue as long as its STATUSis Open. However, jobs are not dispatched unless the queue isActive.
Tracking Batch Jobs
The bjobs command reports the status of LSFBatch jobs. The -u all option specifies that jobs for all usersshould be listed; the default is to list only jobs you submitted. Runningjobs are listed first. Pending jobs are listed in the order in which theywill be scheduled. Jobs in high priority queues are listed before thosein lower priority queues.
If you also want to see jobs that finished recently,enter:
All your jobs that are still in the LSF Batch systemand jobs finished recently are displayed.
The bjobs command has many other options.See 'Batch Jobs'. Also refer to thebjobs(1) manual page for a complete description.
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xbsub and xlsbatch GUI Applications
You can submit your job to the LSF Batch systemusing the X-windows graphical user interface application xbsubas shown in Figure 3.
Figure 3. xbsub Job Submission Window
The xlsbatch command is another X-windowsapplication for LSF Batch (Figure 4).You can use it to monitor host, job, and queue status, and control yourjobs.
Figure 4. xlsbatch Main Window
Both xbsub and xlsbatch have extensiveon-line help available through the Help menu of each application.
xbsub can be started either directly fromthe command line or from xlsbatch using the 'Submit'button.
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These numbers were invented for theexample, and do not necessarily correspond to the actual performance ofthese systems. These values can be changed by your LSF administrator.[Contents][Prev][Next][End]doc@platform.comCopyright © 1994-1997 Platform Computing Corporation.
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